That's nice to know, and now that I think about it I did need a bit more then the nexus ship limit for some later missions. The last few missions I have planned have a rather large(Aka HUGE[And I mean HUGE]) battle with multiple pirate fleets etc.
Off Topic
I have yet to get the skirmisher to work with my mod. I've tried a lot of things, but nothing seems to have any affect on it, I don't even get an error when it crashes it just closes. I know the problem is related to the tacticstypes.ini, however, nothing I did worked
List of things I tried(That I remember doing at least)
Removing and re-adding ships/devices(Didn't get me anywhere with the skirmisher, but I fixed the nexus mod tools with that)
Rewriting the majority of my ships and devices.
Removing smaller automatic weaponry.
Using normal nexus effects/sounds instead of my custom ones.
Decreasing the amount of weapons on ships.
And likely a few other things I forgot.